Re: [PyMOL] [WAS: polygonal ring] cyclic peptide

2014-02-14 Thread Jerome BENOIT
lot), but the ribbon is still open. To what expand the handling of cyclic peptides is and will be supported ? Best wishes, Jerome > > Cheers, > > -- Jason > > On Tue, Nov 5, 2013 at 1:47 AM, Jerome BENOIT wrote: >> Hello Again, >> >> let rephrase my q

[PyMOL] pdbml

2013-11-28 Thread Jerome BENOIT
Hello List, is there any good reason why PyMOL can not read PDBML data files ? Cheers, Jerome -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how

Re: [PyMOL] apply spectrum per MODEL in PyMOL script

2013-11-13 Thread Jerome BENOIT
nmr, discrete=1, async=0 >> as ribbon >> set all_states >> for color, model in zip(range(cmd.count_states()),colors): >> cmd.color(str(color), "state %s" % x) >> On Nov 12, 2013, at 11:32 PM, Jerome BENOIT > <mailto:g62993...@rezozer.net>> wrote: >&g

Re: [PyMOL] apply spectrum per MODEL in PyMOL script

2013-11-12 Thread Jerome BENOIT
> > --- Jason > > On Sat, Nov 9, 2013 at 8:54 PM, Jerome BENOIT wrote: >> Hello List, >> >> is there a way in PML script to apply a specific spectrum to each MODEL (as >> define in PDB data file) ? >> >> Thanks in advance, >> Jerome &g

[PyMOL] apply spectrum per MODEL in PyMOL script

2013-11-09 Thread Jerome BENOIT
Hello List, is there a way in PML script to apply a specific spectrum to each MODEL (as define in PDB data file) ? Thanks in advance, Jerome -- November Webinars for C, C++, Fortran Developers Accelerate application p

Re: [PyMOL] [WAS: polygonal ring] cyclic peptide

2013-11-05 Thread Jerome BENOIT
CA backbones, hence the subject of my first message. > > Hope this helps Thanks, Jerome > > -Original Message----- > From: Jerome BENOIT [mailto:g62993...@rezozer.net] > Sent: Tuesday, 5 November 2013 8:47 p.m. > To: pymol-users@lists.sourceforge.net > Subject: Re:

Re: [PyMOL] [WAS: polygonal ring] cyclic peptide

2013-11-05 Thread Jerome BENOIT
Hello, thanks for the reply. May a ticket be filled ? Jerome On 05/11/13 15:34, Jason Vertrees wrote: > Hi Jerome, > > PyMOL doesn't yet handle cyclic peptides. It's an open case we hope to > resolve soon. > > Cheers, > > -- Jason > > On Tue, Nov

Re: [PyMOL] [WAS: polygonal ring] cyclic peptide

2013-11-05 Thread Jerome BENOIT
Hello Again, let rephrase my question: does PyMOL have support for cyclic peptide (ex. 2NS4) ? Thanks, Jerome On 29/10/13 17:37, Jerome BENOIT wrote: > Hello List, > > So far I use PyMOL to visualize polygonal chain through an expurged PDB data > file when the chain is not ring. &

[PyMOL] polygonal ring

2013-10-29 Thread Jerome BENOIT
Hello List, So far I use PyMOL to visualize polygonal chain through an expurged PDB data file when the chain is not ring. Now I would like to visualize chain rings: what is the best way to make PyMOL understand that the two end points coincide ? Thanks in advance, Jerome --