Re: [PyMOL] PyMOL on the Mac

I second Tsjerk on this, maybe in the .pymolrc? And auto_show_sticks would be very useful to me! Cheers, Greg -Original Message- From: Tsjerk Wassenaar [mailto:tsje...@gmail.com] Sent: Tuesday, March 16, 2010 6:17 AM To: Jason Vertrees Cc: pymol-users@lists.sourceforge.net; David Hall S

Re: [PyMOL] color by element

What I personally do is: cmd.color("grey50","all") util.cnc("all") So that my carbons have the color I wish (grey50), and other atoms are colored by element. Best, Greg -Original Message- From: David Hall [mailto:li...@cowsandmilk.net] Sent: Wednesday, February 10, 2010 1:45 AM To:

Re: [PyMOL] unexpected EOF while parsing

Jouko, Try to use the cmd.load(pdb) command instead of load pdb Apparently, the load statement takes a file name as argument, not a variable, whereas the api call (cmd.load) can handle variables. Best, Grégori -Original Message- From: jo...@uchicago.edu [mailto:jo...@uchicago.edu] Se

Re: [PyMOL] Electrostatic surface visualization

Marco, Maybe you could replace (alter) the B-factor of your protein with the electrostatic values, and color it accordingly; some googling should give you more hints about how you could solve this issue, like http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/data2bfactor.py and http://pldserver