[PyMOL] Pymol-Alignment Module

Dear Pymol community, I have a question about alignment module of Pymol. I have two different pdb ids and each have about 100 amino acid long. I would like to align the specific parts of these proteins and see both how the rest of the proteins and also these specific parts superimpose with each ot

[PyMOL] Protein Alignment

Dear all, I have a question regarding the alignment tool of PyMOL. I would like to align the binding sites of two different proteins with each other and get the corresponding RMSD value. To do this, I selected the ligand and then picked the residues within 8 A away from the ligand of interest for