[PyMOL] How to get all side-chain torsion angles of a protein structure

2020-04-20 Thread Cavi via PyMOL-users
Hi all, I would like to get all the dihedral angles of a protein structure. I'm most especially interested in the side-chain angles. I've only been able to get the phi and psi angles using PyMOL, which is not exactly what I need. Does anyone have a script to calculate the side-chain dihedral ang

[PyMOL] How to select an atom of a particular state

2017-12-20 Thread Cavi via PyMOL-users
Hello everyone! I have a pdb file of a protein structure solved by NMR. It consists of 120 states/models/conformations depending on which term you prefer. Pymol refers to them as states. My question is, if I want to select atom 'CD' of residue number 11 (which is an arginine) of state 76, how c