Hello Pymol users & coders,
I'm trying to make a class where I align two structures, it works, but
I got an (for me) unusual behavior when I use the class twice.
I have the next code:
import __main__
__main__.pymol_argv = [ 'pymol', '-qc'] # Quiet and no GUI
import pymol
import sys, time, os
c
2009/8/29 David Hall
> pymol.cmd.align("%s" % name_struct1, "%s" % name_struct2)
>
oh, thanks =)
>
> should return a list, the first element of which is the rms, if I remember
> correctly.
> Warren can probably say what the rest of the elements are.
>
> On this note, maybe we could start documen
d in the output RMS
> value.
>
> Cheers,
> Warren
>
> > -Original Message-
> > From: Carlos Ríos Vera [mailto:crosv...@gmail.com]
> > Sent: Monday, August 24, 2009 1:44 PM
> > To: pymol-users@lists.sourceforge.net
> > Subject: [PyMOL] RMS
>
Hello people,
I'm trying to use pymol from a custom python scrypt. What I have done
is to align two structures, but I need get the RMS value from that
align but I have no idea how to do it.
I tried to use the RMS command but the value differs from the value
that I get from the align.
Any Idea ho
