[PyMOL] edgelines between molecules

2005-10-19 Thread Balaji Bhyravbhatla
Hello All, I have a large mega-dalton multi chain structure that I would like to make an overview (surface) figure. Instead of using many colors (13subunits) I would like to use one color and demarcate the subunits by some other means.One way would be to generate some sort of edge lines between th

[PyMOL] running pymol from a Mac server

2004-04-03 Thread Balaji Bhyravbhatla
Hi, We have a few users in different labs who want to use Pymol. Rather than installing pymol on all the machines (presently Mac's) I would like to install it on our Xserve. Is it possible to do that without a performance hit? Any recommendations on how to install? I have not done a server inst

[PyMOL] depth cue and strand thcikness

2003-10-08 Thread Balaji Bhyravbhatla
Hi, Is there a way to change the depth cue rendering to go from light to dark rather than the dark to light as the default is? Also, is there a way to change the thickness of the strands in the cartoon representation? Sorry if it is in the archives, the sourceforge site seems to be down at the m

[PyMOL] using macros

2003-10-06 Thread Balaji Bhyravbhatla
Hi, I have not used Pymol much and would like to help a user out. I have installed ccptbx and the numeric stuff. Here is the query: *** I would like to draw the symm cell and axes in pymol. But I am unable to draw the cell. Whe

[PyMOL] compiling pymol --OS-X

2003-03-20 Thread Balaji Bhyravbhatla
Hello All, I am new to the OS-X environment and would like some help getting the program running on a laptop. For practice I setup pymol on an older G3 and all went fine. Complete new install by me. Next I get a laptop of a student and I follow the same instructions of Bill Scott's but get a