Dear Users,
I am trying to implement a script which uses a mix of pymol and python
scripting. I enclosed the main portion within the 'python' and 'python end'
commands. This runs perfectly fine in Pymol GUI mode, however when I tried it
with 'pymol -cg my_script.py', it generates an error:
Tra
proach might be to use the orient command, and then use get_view to
extract the view matrix. Applying the inverse of this to the coordinates should
orient them along the XY axes.
-Spencer
On Thu, Sep 1, 2016 at 3:46 PM, #YEO JINGJIE#
mailto:jy...@e.ntu.edu.sg>> wrote:
Hi Jared,
I think I've answered my own question:
https://sourceforge.net/p/pymol/mailman/message/27824450/
Thanks a lot Jared!
On 1 Sep 2016, at 9:47 AM, #YEO JINGJIE#
mailto:jy...@e.ntu.edu.sg>> wrote:
Hi Jared,
Thank you very much for your information. However, it seems that orient only
ndex.php/Rotate>`, you can get the molecule
aligned in whichever orientation you prefer. E.g:
orient myprotein
turn x, 90
turn y, -90
Hope that helps.
Cheers,
Jared
On Aug 31, 2016, at 6:10 PM, #YEO JINGJIE#
mailto:jy...@e.ntu.edu.sg>> wrote:
Dear Users,
May I know whether there a
Dear Users,
May I know whether there are any methods in pymol to rotate a protein such that
it's longest principal axis is in a particular direction, for instance aligned
to the x-axis?
Best Regards,
Jingjie
**Disclaimer** The sender of this email does not represent Nanyang
Technological Unive
