Re: [PyMOL] Thermal ellipsoids with principal axes

2025-05-01 Thread Takanori Nakane
Hi Thomas, Thank you very much! > "ellipsoid_probability" per atom would also be easy, like this: > > from pymol.editor import iterate_to_list > color_indices = iterate_to_list(selection, "color") > prob_per_atom = iterate_to_list(selection, "s.ellipsoid_probability") Apparently this method is

Re: [PyMOL] Thermal ellipsoids with principal axes

2025-05-01 Thread Thomas Holder
Hi Takanori, This is brilliant. Works like a charm. Thanks a lot for sharing the script. Your scaling factor 32 on "ellipsoid_quality" is a lot higher than PyMOL's native ellipsoids, which use a factor of 12 as far as I can tell. "ellipsoid_probability" per atom would also be easy, like this: f