Hi,
Thanks, that's sorted it.
A follow up question is that when printing the results of the align command,
I've noticed that the number of cycles seems to max out at 1 regardless of what
I set it to - is that because it's reaching convergence after the first cycle?
All the best,
Irwin
___
Hi,
You probably use the script version. In this case you have to use "print"
cmd: align x, y
output: ... Executive: RMSD =4.030 (10847 to 10847 atoms)
cmd: print(cmd.align("x", "y"))
output:
(4.0296430587768555, 10847, 5, 24.87837028503418, 13476, 1234.0, 1192)
Bests, Tamas
On 20
Hi,
I would like to run the Align Python script found on the Align page of the
PyMOLwiki (https://pymolwiki.org/index.php/Align). I've tweaked it slightly for
my uses and it seems to run fine on PyMOL 2.5.0 but according to the wiki it
should output a list of results (RMSD etc) in the internal
