Re: [PyMOL] Installing in Linux

Hello Peter, Which Linux distribution are you using? If you are using one of the Debian-based versions like Ubuntu, then PyMOL is likely available in the distribution's repository. Then you could use the package management system to install it or simply type in a terminal window: sudo apt-

[PyMOL] Align with Axis and Rewrite Coordinates

Is there a way to open a crystal structure and realign the structure with an axis, then save the transformed coordinates? I want all atoms to remain in the same position with respect to each other...just not with respect to the crystallographically defined x, y, z. I have tried alter_state com

[PyMOL] Installing in Linux

Greetings, I've downloaded the Pymol package of executable files and had no trouble installing in Windows but don't know how to proceed in Linux? Can anyone point me in the right direction? Thanks, Peter -- Peter C. Kahn, Ph.D. Professor of Biochemistry Department of Biochemistry & Microbiol

[PyMOL] pair_fit crashes Pymol 2.5.2 (incentive, OSX) ?

Dear pymol-users Could anyone confirm that the following test of the pair_fit command causes a crash in the latest Pymol incentive release (2.5.2, 21st August 2021) ? fetch 1uwh 1z5m pair_fit 1uwh//A/563-582/CA, 1z5m///193-212/CA I've found this crashes 2.5.2-incentive on OSX but works fine on

Re: [PyMOL] CGO object code structure

Hi Marcelo - No I don't believe so. In PyMOL, a CGO `CONE` is a fixed-length list of floats. You can see in the cgo.py source that `cgo.CONE` itself is actually a float, too (specifically, 27.0). My understa