Re: [PyMOL] How to label atom at proper positions?

2022-01-18 Thread sunyeping via PyMOL-users
Dear Professor Halil İbrahim Özdemir, Thank you for your help. The labels shown now are fomatted as "(THR339)", "(SER308)", etc. I wonder how to show them as single-letter codes plus the numbers without the parentheses, like "T339", "S308". Thank you again. Best, ---

Re: [PyMOL] How to label atom at proper positions?

2022-01-18 Thread Jared Sampson
Hi sunyeping, Try this: set label_position, [0, 0, 5] The 5 here moves the label 5 Å closer to the viewer along the viewport Z axis. See also: https://pymolwiki.org/index.php/Label_position Hope that helps. Cheers, Jared On Tue, Jan 18, 2022 at 5:15 AM sunyeping via PyMOL-users < pymol-

[PyMOL] 1. How to label atom at proper positions? (sunyeping)

2022-01-18 Thread ahoneg
You can shift the label position relative to the atom position using the “set label_position” command, or, in edit mode, ctrl-shift-left_click to move the labels in the z-direction. See https://pymolwiki.org/index.php/Label for details Annemarie Honegger > > Message: 1 > Date: Tue, 18 Jan 2022

[PyMOL] How to label atom at proper positions?

2022-01-18 Thread sunyeping via PyMOL-users
Dear pymol users, I select a series of CA atoms in a structure in pymol and show them as sphere in pymol and want to label them. If using the label menu at the up-right conner of pymol, the labels shown overlaps with spheres and can not be seen. So I wish to show the labels at a bit distance fr