Re: [PyMOL] Set label for visible amino acids

2022-01-12 Thread Enrico Martinez
Dear Vijay, thank you very much, it works very good. Magic! :-) Cheers, Enrico ср, 12 янв. 2022 г. в 13:53, Dr. Vijay Masand : > > Dear Enrico > Use the following command: > label n. CA & all within 5 of organic, "%s%s" % (resn,resi) > The above command will label all CA atoms within 5 angstrom fr

Re: [PyMOL] Set label for visible amino acids

2022-01-12 Thread Ali Saad Kusay via PyMOL-users
Hi Enrico, This is actually quite simple, see the PyMOL wiki: https://pymolwiki.org/index.php/Aa_codes Paste this python dictionary into PyMOL: one_letter ={'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q', \ 'ASP':'D', 'ASN':'N', 'HIS':'H', 'TRP':'W', 'PHE':'F', 'TYR':'Y',\ 'ARG':'R'

Re: [PyMOL] Set label for visible amino acids

2022-01-12 Thread Enrico Martinez
exactly we may do it in the context meny for the particular selection (we do not need to select a particular residues, so ..) but may we create the same label using label command as well ?? cmd.label('sele', 'resn') I think something should be used instead of 'resn'. there is also option 'resi' whi