Re: [PyMOL] how to create multi-model pdb for protein-ligand complex?

2022-01-07 Thread Enrico Martinez
In the case of cmd.save("together.pdb", "all", "0", "pdb") it saves everything in one pdb when the protein is present only in the first model, while I need to obtain its representation in all models Cheers E. пт, 7 янв. 2022 г. в 13:14, Saurabh Gayali : > Have you tried the save command after ope

Re: [PyMOL] how to create multi-model pdb for protein-ligand complex?

2022-01-07 Thread Saurabh Gayali
Have you tried the save command after opening both files? https://pymol.org/dokuwiki/doku.php?id=command:save Though not sure how the different poses will merge. Also looking for a solution for a similar problem. -- *Saurabh Gayali* / Post Doctoral Fellow saurabh.gay..

[PyMOL] how to create multi-model pdb for protein-ligand complex?

2022-01-07 Thread Enrico Martinez
Dear Autodock Users! I am dealing with the structural analysis of the protein-ligand interactions observed in the protein-ligand docking using VINA. Basically operating with the outputs I have two different pdb files: 1) for docking receptor (1 protein model) as well as for 2) docking sollutions (1