Re: [PyMOL] Distorted 3-10 helix

Have you tried the "DSS" command? https://pymolwiki.org/index.php/Dss -- *Saurabh Gayali* / Post Doctoral Fellow saurabh.gay...@gmail.com / +91 8800412916 *CSIR-IGIB* New Delhi, India [image: Mailtrack]

Re: [PyMOL] Ruge problem visualization of PDBQT file on pymol

I hope the "show spheres" command represents the ligands better for you. -- *Saurabh Gayali* / Post Doctoral Fellow saurabh.gay...@gmail.com / +91 8800412916 *CSIR-IGIB* New Delhi, India [image: Mailtrack]

Re: [PyMOL] Structure alignment -- general question

Hi George, You can do pairwise alignments, i.e. align 3 of the structures to one structure. You can also use the "extra_fit" method (https://pymolwiki.org/index.php/Extra_fit), i.e: extra_fit name CA, "object", super Replace object with the structure you want the other 3 to align to, this uses

Re: [PyMOL] Structure alignment -- general question

extra_fit command will work in this scenario. More information in documentation here: https://pymolwiki.org/index.php/Extra_fit -- *Saurabh Gayali* / Post Doctoral Fellow saurabh.gay...@gmail.com / +91 8800412916 *CSIR-IGIB* New Delhi, India [i

[PyMOL] Structure alignment -- general question

I’m dealing with 4 heterogeneous structures belonging to the same fold. I’d like to compare some conserved structural features and for this purpose it would be useful that the structures are aligned and then visualised in a grid. I understand that the align command works for 2 structures only. I