Hi Sacha,
You should be able to do this using the rms_curr command
(https://pymolwiki.org/index.php/Rms_cur)
This will compute the rmsd without performing a superimposition
Cheers,
Ali
Ali Kusay | BPharm (Hons) | PhD Candidate & Pharmacist
The University of Sydney School of Pharmacy | Faculty
Hi Jeff,
The sphere size is controlled by the vdw property, to change it:
alter *, vdw=1.0 # this will set the sphere size to be equal for all atom i.e.
hydrogens atom would be same size as carbon
you also need to use the "rebuild" command to implement the changes
At this point, you can contro
Dear all,
I hope you are keeping safe and well.
I am a new user to PyMOL and had a query that I hope someone can help me with.
I have performed an alignment of two homologs with the super command on PyMOL,
I have generated a rmsd value for this alignment using the C-alpha atoms as
comparison.
