Re: [PyMOL] Label charge sites, termini, check contrast

Hi Ali, Thank you for the brief and thorough explanation! All those commands gave exactly what I was looking for! Many thanks, Neena On Fri, 29 Jan 2021 at 18:36, Ali Saad Kusay wrote: > Hi Neena, > > A simple way to label in PyMOL is to simply select the atom you want and > enter the followin

Re: [PyMOL] Label charge sites, termini, check contrast

Hi Neena, A simple way to label in PyMOL is to simply select the atom you want and enter the following command: label sele, "what you want to label" I.e. for the N: label sele, "N" PyMOL can render the special ⨁ you are using, through unicode: label sele, '\u2A01' Visit the wiki for more info

[PyMOL] Label charge sites, termini, check contrast

Hello PyMOL users, Is there a way to label charge sites and termini on PyMOL as I have shown in the below figure instead of using Paint? In addition, is there a way to check color contrast for this peptide structure for making it more accessible to the readers? [image: image.png] Many thanks, Neen

Re: [PyMOL] representation of residue sidechain within a beta strand?

Hi Yufeng, The "Properties" panel can show you which settings got changed with the preset. The "pretty" preset indeed sets "cartoon_side_chain_helper" to "off" for the object. The easiest way to clear this setting is to use the "unset_deep" command. unset_deep cartoon_side_chain_helper set car