Dear All,
I load a molecular dynamics (gromacs) trajectory into Pymol and wish to make a
movie with it. The trajectory contains 2500 frames, corresponding to 200 ns
simulation time, so each frame represents 80 ps. I wish to print time stample
on each stample. For example, on the first frame, "
fetch 6h07, type=pdb1
Roger Rowlett
Gordon & Dorothy Kline Professor, Emeritus
Department of Chemistry
Colgate University
On Tue, Jan 14, 2020, 3:42 AM Clelia Canova wrote:
> Hi!
>
> I’m studying the file *6H07. pdb *for a project, download for rcsb.com.
> How can I see the Biological Assembly
Hi Clelia,
You can use the split_states command on 6h07 to make each frame an object,
If you want to combine them into a single object, use the following to make the
chains unique:
alter 6h07_0002 and chain A, chain = 'C'
alter 6h07_0002 and chain B, chain = 'D'
Then combine using:
create 6h07_
Hi!
I’m studying the file 6H07. pdb for a project, download for rcsb.com.
How can I see the Biological Assembly on Pymol like in PDB, instead of seeing
only the monomer (asymmetric unit).
In the screen I see 6h07 1/4 and not 4/4.
In the commander zone it’s written:
” Detected 4 cpu cores. Enab
