[PyMOL] auto focus after creating

Hello, When I create an object, it will be zoomed and focused. Where can I change setting for this? Thanks. Michael ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https:/

[PyMOL] rename/assign residue names

Dear all, I need assign some residue names in a PDB file. Basically, I need the following: select a group of atoms, assign a residue name to the group and save into the PDB file. Can this be done by pymol or vmd? Editing the original PDB Text is not a good idea because it is very difficult to p

Re: [PyMOL] How to best create a sliding window (a selection of specific residues) and compare specific residue names+numbers in pymol/python?

Hi Anne, This is not at all an obvious question, it's quite advanced! Impressive code snippet for a newbie :-) For the sliding window question, I suggest to have a look at the implementation of "local_rms" from the psico package: https://github.com/speleo3/pymol-psico/blob/master/psico/fitting

Re: [PyMOL] cmd.get_model

Hi Jeong, cmd.get_model() has not been replaced or removed. What error do you get? This code should work: from pymol import cmd print(cmd.get_model()) Cheers, Thomas > On Mar 22, 2019, at 3:16 AM, 정보성 wrote: > > Hi All, > > My Pymol version is 2.1.1 and I can not find the cmd.get_model i