[PyMOL] how to make selected residues blurry?

2018-12-02 Thread sunyeping via PyMOL-users
Dear all, Could you please check this figure at the following link? https://drive.google.com/file/d/1Uh9JRh7x0sjv-zGp_0ZKPc1cnWotkZA0/view?usp=sharing The structure in blue in this figure is prepared from chain A of pdb id 4gms. Some residues are highlighted and look sharp ( as indicated in the

Re: [PyMOL] getting transformation matrix

2018-12-02 Thread Fedaa Nada via PyMOL-users
here what I did .. using pymol1- I loaded post and pre-processing object2- I aligned them together3- I tried to get the transformation matrix with this commandprint cmd.get_object_matrix("pre-processing object")and this step returns a 4*4 matrices(-0.017042629420757294, 0.6273888349533081, -0.7