It can easily be done in PyMOL
Select your molecule, then in the right side select A(Action)->Generate->Vacuum
Electrostatic
Or there are plenty of tutorials on the web for APBS
Hope this helps
J
From: Clarisa Alvarez
Sent: Thursday, 28 June 2018 3:05 AM
To: pymol-users@lists.sourceforge.ne
Dir Sir/Madam,
I need coloring my protein surface by electrostatic characteristics.
Do I need to install APBS? because i could not do it. If you could help me
it will be greatful.
Thanks in advance,
Yours,
Clarisa.
--
Check
Hi Nathan,
Sounds like you are doing everything correct. Would it be possible to send me
the input files?
Thanks,
Thomas
> On Jun 26, 2018, at 10:58 AM, Nathan Clement wrote:
>
> Hi,
>
> I'm trying to compute the interface RMSD (iRMSD) between two protein pairs
> that are highly similar (
I have an EM map which has been surface coloured in multiple different colours
using the ramp_new command and follows the colour scheme of multiple fitted pdb
chains using the ‘atomic’ special color function. I want to now slice my EM map
to generate a cross section and then surface cap the inte
Hi,
I'm trying to compute the interface RMSD (iRMSD) between two protein pairs
that are highly similar (might have a few missing residues, but are
otherwise identical). Right now, my code does something like the following
for protein pairs "gold" and "test" (receptor has chains A+B and ligand has
