Hi Baptiste -
You can loop through your loaded objects within a Python code block for this.
This works for me with a different set of related structures:
```
python
dihedral = ['N', 'CA', 'CB', 'CG']
for obj in cmd.get_names():
residue = "/{}//A/288/".format(obj)
angle = cmd.get_dihedr
Hi Hélène,
It's a custom algorithm developed by Warren DeLano. Some of the details are
discussed in this post:
https://sourceforge.net/p/pymol/mailman/message/7561993/
The implementation is in SelectorAssignSS in layer3/Selector.cpp:
https://sourceforge.net/p/pymol/code/HEAD/tree/trunk/pymol/lay
Dear pymol users,
For a project based on proteins secondary structures (ss), I need to know
which algorithm/program does PyMol use to retrieve secondary structures
from a pdb file (when the ss datas are not display in the file).
I retrieved ss using dssp program, and for some pdb files, it shows
Dear all,
I wounder to know about possible ways to measure chi1, chi2 dihedral
angles on a set of structures. For example, I opened 10 pdb files and
the phi_psi command allows us to easily obtain the phi and psi values:
Ex: To obtain the phi and psi values of the residue 288 of the chain A
in
