Re: [PyMOL] How to select nucleic/protein separately

2017-12-15 Thread Tony Lewis
Dear PyMOL people, Please can anyone tell me if there's any way to draw/ray so that a selection exactly fills the frame? At the moment, I'm using `zoom complete=1` (restricted to the protein) and then I'm auto cropping the resulting image (with `convert -trim`). This is solution is good enough bu

Re: [PyMOL] Upgraded from 1.7 to 1.9: Different behavior

2017-12-15 Thread Thomas Holder
Hi Thomas, To have same stick size for hydrogens, set stick_h_scale to 1.0, see: https://pymolwiki.org/index.php/stick_h_scale I don't think that PyMOL's behavior for loading multi-entry .sdf files has changed. If get the same behavior in 1.7.2.1 and any other version. The entries are loaded in

[PyMOL] Upgraded from 1.7 to 1.9: Different behavior

2017-12-15 Thread Thomas Strunz
I've upgraded some of the users to version 1.9.0.0 due to moving to windows 10. It's the build from Christoph Gohlke. We use it mainly for one purpose and to make it easier I created a short pml script to load the data and apply settings. However pymol doesn't behave the same anymore. The sc