[PyMOL] Using the APBS Plugin

2017-05-04 Thread Kanishk Jain
Hello, I've been using PyMol for sometime now, but I haven't used the APBS plugin before. I feel stupid asking this, but should the apbs.py and psize.py files be already loaded? As in, should the paths to those files already appear in the the program locations tab? Those fields are empty and I'm n

[PyMOL] Is there a way to "count" hydrogen bond interactions?

2017-05-04 Thread Ahmad Abdelzaher
I know I can can find the hydrogen bond interactions between a selection and surrounding residues within a certain radius. I would like to find a way to retrieve the actual count of those interactions per residue. How can I do it in the API? Regards. --

[PyMOL] volume calculation

2017-05-04 Thread Maheshwaran.V
Hi, How to calculate the VOLUME of the protein using pymol ? Is there anyother tools out there to calculate.. - Maheshwaran -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.