Re: [PyMOL] plugin manager

2017-04-11 Thread Thomas Holder
Hi Raag, You need to run MacPyMOL with the "X11 Hybrid" interface, see: https://pymolwiki.org/index.php/MAC_Install#X11_Hybrid Cheers, Thomas On 12 Apr 2017, at 08:02, Raag Saluja wrote: > Hi! > > I needed to install PyTMs but am unable to do so. I can't find the plugin > manager. In the

[PyMOL] plugin manager

2017-04-11 Thread Raag Saluja
Hi! I needed to install PyTMs but am unable to do so. I can't find the plugin manager. In the menu, after the wizard I have 'help' not 'plugins'. I installed the educational version of MacPyMOL in around Aug/Sep 2015. Looking forward to your help, Regards, Raag --

[PyMOL] 1st Call For Papers - 24th Annual Tcl/Tk Conference (Tcl'2017)

2017-04-11 Thread akupries
Hello pymol-users, fyi ... 24th Annual Tcl/Tk Conference (Tcl'2017) http://www.tcl.tk/community/tcl2017/ October 16 - 20, 2017 Crowne Plaza Houston River Oaks 2712 Southwest Freeway, 77098 Houston, Texas, USA Important Dates: Abstracts and proposals due August 21, 2017 Notification to author

Re: [PyMOL] Segmentation fault

2017-04-11 Thread Thomas Holder
Hi João, Before diving into the hassle of installing additional compilers (which probably won't make a difference) I recommend to get familiar with a debugger like gdb and obtain a stack trace of the crash. To compile PyMOL with debug symbols, do export DEBUG=1 before running setup.py. Then r

Re: [PyMOL] Segmentation fault

2017-04-11 Thread João M . Damas
Thanks for the feedback, Folmer! I am using CentOS. I already used --use-msgpackc=no and it did not improve. gcc --version gives me 4.8.5 (I cannot update more). Do you think it would be worth it to install gcc 4.9? On the install page there was said that a regression to 4.4 could work, but I don’

[PyMOL] Question about pymol movies

2017-04-11 Thread Miguel Garavís
Hi Pymol Users, I need your help with an issue related to movie in pymol. I know how to change the representation of the molecule that appears in my movie at a given frame but I don't find the way to change the representation of just a given part of such molecule, lets say make some residues becom