[PyMOL] Pymol fab ss = 4 introduces bends in the structure

You get kinks wherever there is a proline in the sequence, because the ring of the PRO residues restrict the phi angle Annemarie > > -- > > Message: 4 > Date: Fri, 7 Apr 2017 14:26:34 +0200 > From: Ahmad Abdelzaher > Subject: [PyMOL] Pymol fab ss = 4 introduces b

Re: [PyMOL] Pymol fab ss = 4 introduces bends in the structure

Hi Ahmad, Because the chain contains prolines. These typically cause kinks in a chain. Cheers, Tsjerk On Fri, Apr 7, 2017 at 2:26 PM, Ahmad Abdelzaher wrote: > Hello, > > I used cmd.fab('sequence', ss=4) to create 1baz_linear_protein.pdb, > where sequence is the sequence extracted from 1baz.p