Dear all,
I've written a .pml script to render volumes and save png files. The script
works fine when running it from the GUI, but for some reason when I run in
command line mode with pymol -cqr myscript.pml the image saved is blank.
It appears that when running from the command line it automatic
One option is to turn off shadows:
set ray_shadow, off
Will that work for you?
___
Roger S. Rowlett
Gordon & Dorothy Kline Professor
Department of Chemistry
Colgate University
13 Oak Drive
Hamilton, NY 13346
tel: (315)-228-7245
ofc: (315)-228-7395
fax: (
Dear Vivian
If you just want to get rid of shadows in exported ray-traced images, you can
specify
set ray_shadows, 0 (https://pymolwiki.org/index.php/Ray_shadow)
set depth_cue,0 (https://pymolwiki.org/index.php/Depth_cue)
will get rid of the color modulation due to dept cueing
Annemarie
-
Hi Clarissa
I have just deposited the slides to my 1.5 day class on macromolecular
visualization on Research Gate
https://www.researchgate.net/publication/313877004_Introduction_to_PyMOL
https://www.researchgate.net/publication/313877009_Intermediate_PyMOL
https://www.researchgate.net/publicatio
Hi Rui,
Thank you!
I also already figured out that if I turn off the depth cue most of my
problem is solved as well ( set depth_cue, 0)
-Vivien
From: Rui Sousa [mailto:rui.so...@univ-nantes.fr]
Sent: Thursday, February 23, 2017 10:02
To: pymol-users@lists.sourceforge.net
Subject: Re
Hi Vivian,
I'm not sure if I fully understand your question, but if you want to
have a picture without shadows, by using "set light_count, 0"
(https://pymolwiki.org/index.php/Light_count) you should be able to
achieve this.
Rui
Le 22/02/2017 17:46, Vivien Schoonenberg a écrit :
Hi,
I’m r
Hi,
I'm recoloring my protein in different shades of similar colors, but to
truly see the difference between them, I want to create a view in pyMOL
without any shadows.
For this purpose, I want to make a half sphere behind the camera with
lights, which all emit the same amount of light. I have
