Re: [PyMOL] Scripting coloring method via own calculations

2017-02-14 Thread Tsjerk Wassenaar
Hey :) Just as sidenote, the spectrum command takes arbitrary color schemes. Just combine colors separated by underscores. Also fun in combination with set_color :) Cheers, Tsjerk On Feb 14, 2017 5:46 PM, "Robert Campbell" wrote: Hello Peleg, I think there are other possibilities, but my dat

Re: [PyMOL] Scripting coloring method via own calculations

2017-02-14 Thread Robert Campbell
Hello Peleg, I think there are other possibilities, but my data2bfactor.py script will do that for you. You create a file with whitespace-separated columns (spaces and/or tabs) in which each line contains: chain resi resn name data (i.e. chain, residue number, residue name, atom name and val

[PyMOL] Scripting coloring method via own calculations

2017-02-14 Thread Peleg Bar-Sapir
Hello, I wish to write a script that will take the molecule loaded in PyMol, and color the molecule according to values I will calculate using the molecules' parameters (in the end there will be one floating number per atom). Then, I would like to display that using surface mode. Could anyone dir

[PyMOL] color ramp for colorbyrmsd

2017-02-14 Thread Laura Fedele
Hi Pymolers I would like some help regarding a spectrum bar. I have generated an homology model of a structure and I wanted to compare to the template, to achieve this I have used the colorbyrmsd script https://pymolwiki.org/index.php/ColorByRMSD It works great but I would like to generate a

Re: [PyMOL] Unofficial Windows PyMOL Binaries fails to run

2017-02-14 Thread Ioannis Michalopoulos
Dear Christoph, Thank you for your input. When I installed "Microsoft Visual C++ 2015 Redistributable", as you suggested, PyMOL worked! Nevertheless, I now experience a problem, I have already mentioned in some previous binaries. I cannot save MPEGs: https://sourceforge.net/p/pymol/mailman/mes