Hi Praz,
There is no line transparency setting. But since the ray tracer anyway renders
lines as thin sticks, you can show sticks instead of lines and use
stick_transparency.
show sticks
hide lines
set stick_radius, 0.1
set stick_transparency, 0.5
ray
Hope that helps.
Cheers,
Thomas
On 14
Spencer's example was in PyMOL command syntax (.pml script). To use it in a
Python script, it would look like this:
from pymol import cmd, stored
stored.f = open("ss.txt", "w")
cmd.iterate("n. CA", "stored.f.write(resi + ':' + ss+'\n')")
stored.f.close()
Cheers,
Thomas
On 13 Jan 2017, at 18:4
Dear all,
I am wondering if it's possible to vary the transparency of the line
representation in PyMol.
Currently I display the protein as a cartoon, then duplicate the object and
display it as a line (preset: technical, to be specific), but I want the
line representation to be less visible. Of c
