Re: [PyMOL] Active site in Pymol

2016-09-29 Thread Julian Heinrich
Hi, you can use the Measurement Wizard to get distances between atoms. PyMOL will also print the residue type in the console if you click on any atom. Best, Julian On Tue, Aug 23, 2016 at 8:45 AM Farzaneh Namazifar < f.namazifar706...@gmail.com> wrote: > Hi Dear all; > I am a PyMol user. I re

Re: [PyMOL] error message for forster resonance calcualtor

2016-09-29 Thread Julian Heinrich
Hi Andina, did you try to run 'import Forster_distance_calculator.py' from the Pymol command line? Have you tried to do 'run Forster_distance_calculator.py' instead, then 'forster ...' ? Cheers, Julian On Mon, Sep 19, 2016 at 9:52 AM Andina Diana wrote: > Hello everyone, > > > > I have downl

Re: [PyMOL] Pymol Command window not displaying

2016-09-29 Thread Julian Heinrich
Hi, are you trying to run PyMOL remotely, i.e. via ssh from your cluster? This might work if you forward X11 to your local machine, though I'm not sure if it supports OpenGL. Looking at the error message, another possibility might be a missing tcl/tk library? Good luck, Julian On Tue, Sep 20, 2