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You need to add “,async=0” to your fetch calls.
http://pymolwiki.org/index.php/Fetch
> On Apr 28, 2016, at 4:51 AM, James Starlight wrote:
>
> Hi,
>
> My script is
>
> pdb_array=("1UBI" "1IGD" "1G33" "1CC7" "4LGJ" "5A2H")
> pdb_array_store=$template/pymol
>
>
> # A simple FETCHER via PYMO
Hi,
My script is
pdb_array=("1UBI" "1IGD" "1G33" "1CC7" "4LGJ" "5A2H")
pdb_array_store=$template/pymol
# A simple FETCHER via PYMOL: download pdbs to the folder and pre-process them!
mkdir ${pdb_array_store}
for i in ${pdb_array[@]}; do
pdb_tit=$(basename "$i")
pymol -d "fetch $i; save ${pdb_ar
