[PyMOL] calculation of the contact surface between subunits

Dear All, Will you please tell me the pymol command for calculation of the contact surface between subunits of a protein complex? And what is the command for calculation of the cavity volume surrounded by the protein complex? Smith--

Re: [PyMOL] The Wiki appears outdated or in error

Bob, Thanks for the note. The pdf files you generated were quite nice. I just cannot get the quality of output you got using the PyMOL to dae to u3d to pdf path. All I get are washed out colors. No surface properties (shine, specular, etc.) at all. PDF3DReportGen is the only software

Re: [PyMOL] Problem with isomesh without map

Hi Filip, This is a bug, we'll fix that (probably by next week, looks like an easy fix). Cheers, Thomas On 01 Apr 2016, at 16:16, Filip Leonarski wrote: > Hi, > >I'm struggling with making compact PSE files with Pymol state for ribosome > structures with electron density maps. In gene

[PyMOL] Problem with isomesh without map

Hi, I'm struggling with making compact PSE files with Pymol state for ribosome structures with electron density maps. In general these maps are huge in 200-500 MB range. In previous versions of PyMol (1.7.x) a following trick worked: a) make isomesh b) delete map c) save pse PSE was of a decent