Thank you Tsjerk. What we do right now is just open VMD and use the membrane
builder, then take that file back into PyMOL!
> On Feb 3, 2016, at 12:29 PM, Tsjerk Wassenaar wrote:
>
> Hi Adam,
>
> Well, for putting it on the Pymol wiki, I'll at least have to wait and see
> how far my students g
Hi Adam,
Well, for putting it on the Pymol wiki, I'll at least have to wait and see
how far my students got with integrating the routine in a webservice. If
they already managed, it will be as easy as submitting the structure and
saying what membrane you want. Otherwise, it will require some downl
Thanks Jared, this worked.
Since I only have the extracellular domains of the receptors, i used the
center-of-mass of all extracellular domains as one point,
and the centre-of-mass of the alpha atoms closest to the membrane for all
receptor moleculees as a second point,
then shifted copies of
Hi all,
translate does seem to work with CGOs if you use named arguments (note the
'object=' in the argument list):
cmd.translate([x,y,z], object='membrane')
Here's an example that you can copy and paste into pymol:
---
python
from pymol.cgo import *
from pymol import cmd
from pymol.vf
