Hi
I have a multi-state object loaded in PyMOL which represents transition of
a domain from one orientation to the other. I tried using "show_bumps.py"
to bring up clashes during the transition but the cgo that is written out
shows clashes only for the first state. Am I doing something wrong or
sh
Hi Joel,
I had the same problem recently and Schrodinger released a patched version for
this (v 1.8.0.2). If you go to the download page (I'm assuming as you use
Windows you pay for the binary) it should be there.
best,
Iain
From: Joel Tyndall
Sent: Wednes
Hi,
Having used Pymol for over a decade, I have a lot of (session) files from
previous releases of Pymol. Unfortunately I am no longer able to open them in
1.8.0.0 on a windows 10 machine either from File open session or simply double
clicking. (pymol.exe has stopped working). I am not convince
Dear pymol users,
I have 2 ligand molecules having similar backbone. There is little
difference between them. When I load them in pymol, I have following figure:
https://www.dropbox.com/s/k4g53p0qoxp58zs/pymol.png?dl=0
I want to have these 2 ligands in superimposed form such as following:
https:/
Dear Tsjerk,
Thanks! simply including
if '-c' in invocation._argv
in the script works fine for me,
Best,
Folmer
2016-01-27 12:43 GMT+01:00 Tsjerk Wassenaar :
> Hey Folmer,
>
> You can check if '-c' not in invocation._argv
> Of course, you'd also need to check combinations, so it would be matchi
Hey Folmer,
You can check if '-c' not in invocation._argv
Of course, you'd also need to check combinations, so it would be matching
-.*c.* on the elements in _argv.
There probably is a way to check for the GUI directly though.
Hope it helps,
Tsjerk
On Wed, Jan 27, 2016 at 11:49 AM, Folmer Fred
Hi there,
I was wondering if there is a way to check if a .pml is being run in
command line mode (pymol -c), i.e. without the GUI.
The reason I'm asking, is because I am making some scripts for figures,
and save the representations as scenes. It would be nice to both be able
to view them (running
