Re: [PyMOL] how to close displaying a molecule

2015-12-10 Thread Albert
just click the b.pdb on the Pymol object manager bar to undisplay it. That's the basic of basic usage of Pymol. Wouldn't it be nice if you spend a few minutes to go through Pymol manual? On 12/11/2015 08:19 AM, Smith Liu wrote: Dear All, Suppose by pymol I have opened A.pdb abd B.pdb. Is a

Re: [PyMOL] how to close displaying a molecule

2015-12-10 Thread Tsjerk Wassenaar
Hi Smith, You can delete the object: delete B Cheers, Tsjerk On Fri, Dec 11, 2015 at 8:19 AM, Smith Liu wrote: > Dear All, > > Suppose by pymol I have opened A.pdb abd B.pdb. Is anyway I close B.pdb > and have only A.pdb displayed? > > Smith > > > > > > >

[PyMOL] how to close displaying a molecule

2015-12-10 Thread Smith Liu
Dear All, Suppose by pymol I have opened A.pdb abd B.pdb. Is anyway I close B.pdb and have only A.pdb displayed? Smith -- ___ PyMOL-users mailing list (PyMOL-users@lists.sou

[PyMOL] (no subject)

2015-12-10 Thread Dan Lin
Dear all: It appears that pymol only interpolates motions that include rotations by moving the object along an arc. I would like to make a movie that does not do this, but rather, moves the object along a straight line while rotating the object. Unfortunately, I'm absolutely at a loss about how I

[PyMOL] Problem with pymol

2015-12-10 Thread soumi
Respected Sir, Can I build a model using missing residues through Pymol ? If it is,Please tell me the way. With Regards, SoumiDas-- ___ PyMOL-users mailin

[PyMOL] Fw: on load new B-factors

2015-12-10 Thread Smith Liu
in addition, now it occurs "[Errno 2] No such file or directory: 'newBfactors.txt', although I have specified the directory of 'newBfactors.txt'. It seems this error message has no relation with which directory I put 'newBfactors.txt'. Any advice? Smith Forwarding messages -

[PyMOL] on load new B-factors

2015-12-10 Thread Smith Liu
Dear All, When I use "loadBfacts mol, [startaa, [source, [visual Y/N]]]", I meet the following error message, "File "Some_directory\parse.py", line 250, in parse self.result=app(layer.kw[0],layer.args,layer.kw_args) File "loadBfacts.py",line 16, in loadBfacts obj=cmd.get_object_list(mol)[0] Ty

Re: [PyMOL] Problem using pymol

2015-12-10 Thread Spencer Bliven
> Please let me know how can I renumber protein chains to avoid overlap and > give it a uniqu chain id. > You can manually modify chain IDs with the alter command. For instance, to rename chain A to X: alter chain A, chain = "X" To automatically select uniq