Dear Thomas,
I do not know I still do something wrong.
First I load a PDB in pymol, then I input orient (with orient input the
molecule really moved significantly in display), then I input
transform_by_camera_rotation, then I input save /tmp/withneworientation.pdb,
the withneworientation.pdb
Hi Smith, and everybody who tried to help you so far,
Short answer: copy and paste this into the PyMOL command line, it will save the
view-transformed object to "transformed.pdb" in your home folder.
cv=list(cmd.get_view())
cmd.transform_selection("all", \
cv[0:3]+[0.0]+ \
cv[3:6]+[0.0]+ \
Dear All,
Will you please show me how to display an axis of a subunit or a domain by
pymol?
Smith--
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