Re: [PyMOL] default fetch format

2015-11-23 Thread Schubert, Carsten [JRDUS]
You may want to form you own opinion and take a look at this thread and others in CCP4 https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ccp4bb;8e513bea.1308 I hope the link works. There has been extensive and heated debate over the merits of mmCIF vs. PDB on the same BB. The wwPDB is pushing mmCI

Re: [PyMOL] smooth-ribbon

2015-11-23 Thread Oganesyan, Vaheh
Found: hide everything show cartoon cartoon tube set cartoon_tube_radius, (number) Regards, Vaheh Oganesyan MedImmune, ADPE www.medimmune.com -Original Message- From: Oganesyan, Vaheh Sent: Monday, November 23, 2015 2:52 PM To: pymol-users@lists.sourceforge.net Subject: smooth-ribbon

[PyMOL] smooth-ribbon

2015-11-23 Thread Oganesyan, Vaheh
Hey PyMOLers, Would you know how to show smooth ribbon? I can use cartoon_oval_length command to get almost what I want, however only for helices. Thanks in advance. Regards, Vaheh Oganesyan MedImmune, ADPE www.medimmune.com To the extent this electronic communication or any of its attachmen

Re: [PyMOL] real time minization in Pymol

2015-11-23 Thread Albert
Yes, I also really love this function. However, for the sake of accuracy, I believe many users will also strongly demand for introducing forcefield for minimization..I am looking forward to see that "optimize" plugin would somehow merged into "Molecular Sculpting".At least, it is very e

Re: [PyMOL] real time minization in Pymol

2015-11-23 Thread H. Adam Steinberg
I would love to see this feature improved! Try it out if you have never used it. It works quite well. It is quite processor intensive and it can take over your computer when it is running…. I have also found when you uncheck it in the menu, it will still continue to run and I end up force quitt

[PyMOL] real time minization in Pymol

2015-11-23 Thread Albert
Hello: I just found a a very nice module of pymol, called "Molecular Sculpting". However, according to the description in Pymolwiki, it works like a real-time energy minimizer, except that it isn't minimizing the energy. Instead, its just trying to return local atomic geometries (bonds, angles