I think the major concern is how Pymol depicts the pi-pi stacking Of
course we can identify such interaction immediately as soon as we open
the system in Pymol.
However there is no any components to indicate this, eg: we can depict
the H-bond with a dash between two atoms but how could pi
Hi Amali,
I am not aware that PyMOL has this feature implemented out-of-the-box.
Nevertheless this can be done with PyMOL. A crude approximation will be to
measure the distance between the center of aromatic rings and consider a
pi-pi stacking for distances shorter than a threshold value. A better
Dear all,
I want to know can we identify p-p stacking interactions using PyMOL?
Can anyone help me?
Thank you in advance.
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On 09/11/15 09:05, Tom Aharoni wrote:
> Hey :)
>
> I would like to work with pymol commands such as
> cmd.distance() etc using Python 3.4.3 Shell.
>
> However when I try "import pymol" i get this message:
>
> Traceback (most recent call last):
> File "", line 1, in
> import pymol
> Impo
Hey :)
I would like to work with pymol commands such as
cmd.distance() etc using Python 3.4.3 Shell.
However when I try "import pymol" i get this message:
Traceback (most recent call last):
File "", line 1, in
import pymol
ImportError: No module named 'pymol'
I would very appreciate your
