Re: [PyMOL] pymol to webGL?

That really weird! the script is expecting a list but is getting an integer. Could you send me the "my" molecule or a pse file with that molecule? or at least other molecule that give you the same error? Cheers, Osvaldo. On Sat, Oct 17, 2015 at 5:49 PM, Albert wrote: > Thanks a lot for furthe

Re: [PyMOL] pymol to webGL?

Thanks a lot for further advice. Here is what I got: PyMOL> run exportToWeb.py PyMOL>exportToWeb my Traceback (most recent call last): File "/home/albert/install/pymol-1.7.6/modules/pymol/parser.py", line 256, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File "expor

Re: [PyMOL] pymol to webGL?

Hi Albert, I do the following steps and I get a .html file as expected. 1. I download and unpack this file. The script there seems to be similar to the one you attached. 2. Lauch PyMOL and do some stuf

Re: [PyMOL] Change bond thickness

Thank you all for your kind reply, it worked like a charm! 2015-10-17 4:53 GMT-03:00 Osvaldo Martin : > Hi Henrique, > > Given that you are new to PyMOL I just want to add that you can explore > all the available settings and their values going to settings --> edit all > (on the external GUI). >

Re: [PyMOL] pymol to webGL?

Hi Albert, I change the code to bgcolor = cmd.get_color_tuple(cmd.get_setting_tuple('bg_rgb')[1][0]) ret += "\nbgcolor:%02x%02x%02x" % (int(255 * float(bgcolor[0])), \ int(255 * float(bgcolor[1])), int(255 * float(bgcolor[2]))) I think the code is correct, anyway when I export the scen

Re: [PyMOL] pymol to webGL?

Hi Albert, I get the following error Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 254, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File "exportToWeb.py", line 138, in dump_rep int(255 * float(bgcolor[1])), int(25

[PyMOL] pymol to webGL?

Hello: I noticed that there is a plugin called exportToWeb.py I try to rum it with command: python exportToWeb.py test.pse However, no any new file generated I am just wondering how shall we use this script correctly? thanks a lot Albert --

Re: [PyMOL] Change bond thickness

Hi Henrique, Given that you are new to PyMOL I just want to add that you can explore all the available settings and their values going to settings --> edit all (on the external GUI). Cheers, Osvaldo. On Sat, Oct 17, 2015 at 9:12 AM, Jame R.Ketudat-Cairns wrote: > Deaer Henrique, > >This

Re: [PyMOL] Change bond thickness

Deaer Henrique, This is easy to find in "ball and stick" in the Wiki, but it appears to be down: set stick_radius, number, selection where number is your stick radius, try 0.1 to 0.2 and play with it (selection is the object name for your ball and stick representation or leave off for ever

Re: [PyMOL] Change bond thickness

?Dear Henrique, Sorry, that was supposed to be "set_bond stick_radius, number, selection" Best Wishes, Jim From: Henrique C. S. Junior Sent: Saturday, October 17, 2015 10:30 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Change bond thic