Dear Pymolers,
I am looking forward to make a movie for a nucleic acid where I would like
to show the opening/bond breaking of several base pairs and interaction
with another protein. Is it possible to do this in pymol? Any help
regarding this is highly appreciated!
Regards
Ravi
-
*Department of Pharmacological Sciences at **Stony Brook University *
*Tenure-Track Cryo-EM Faculty Position in Conjunction with the
Interdisciplinary Biomolecular Imaging Cluster Hiring Initiative*
The Department of Pharmacological Sciences (
http://www.pharm.stonybrook.edu/faculty_research/
Hi Dirk,
cmd.iterate is actually the most efficient function to access atom properties.
If you want a wrapper which directly gets b and q for one atom, it could look
like this (returns a dictionary):
from pymol import cmd
@cmd.extend
def get_signle_atom_props(selection, props=['b', 'q'], quiet=
1. Make the subunits into separate objects
2. Command
set cartoon_cylindrical_helices, on, [object name]
for the one you want to have cylinders
Shane Caldwell
McGill University
On Thu, Aug 27, 2015 at 4:01 AM, Smith Liu wrote:
> Dear All,
>
> Suppose a protein contains 2 subunits. Will you p
Dear PyMOLers,
I have trouble to find out, which command I could use in a python script
to get the b-factor and occupancy of a single atom.
In the script library, I only found examples getting b-factors iterating
over a selection.
Although, I could iterate over one atom, only, is there a more el
Dear All,
Suppose a protein contains 2 subunits. Will you please introduce to me by pymol
how to represent helix in one subunit as cylindrical helix, and helix in
another subunit as regular helix?
Best regards.
Smith---
