Re: [PyMOL] visualize mode

2015-06-19 Thread Emilio Xavier Esposito
Hi What about Modevectors? http://www.pymolwiki.org/index.php/Modevectors Emilio On Fri, Jun 19, 2015 at 10:23 AM, Command Line wrote: > Hi, that works for me. Albeit I would be more happy if there would be an > option directly inside pymol. Anyway, thanks. > > 2015-06-18 16:30 GMT-05:00 Osvald

Re: [PyMOL] visualize mode

2015-06-19 Thread Command Line
Hi, that works for me. Albeit I would be more happy if there would be an option directly inside pymol. Anyway, thanks. 2015-06-18 16:30 GMT-05:00 Osvaldo Martin : > Hi, > > Do you want to do something similar to porcupine plots? If so, check the > porcupine function in this Ipython notebook >

Re: [PyMOL] Error: "NameError: name 'callback' is not defined"

2015-06-19 Thread Thomas Holder
Thanks Jose, looking forward to the new CMview version! There is a workaround to get current CMview and latest PyMOL to work together: Create a pymolrc file with the following content: from pymol import cmd __import__('sys').modules['cmd'] = cmd FYI: In PyMOL 1.7.3 we changed the pymol namespac

Re: [PyMOL] Error: "NameError: name 'callback' is not defined"

2015-06-19 Thread Jose Manuel Duarte
Hi Chiranjeev It looks like this is an issue in CMview, not in PyMOL. The script used to interact with PyMOL contains an incompatible import on PyMOL versions 1.7.3+. Thanks to Thomas Holder this is now fixed in github. In the next weeks we are going to try to get out a new release of CMview