Hi McGill,
Thank you very much! This is very helpful as I get started!
Maze
From: caldw...@gmail.com [mailto:caldw...@gmail.com] On Behalf Of Shane Caldwell
Sent: Tuesday, June 09, 2015 12:18 PM
To: Ndonwi, Maze
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Can PyMOL run predicted PDB
Hi Maze,
You should be able to download the Phyre2 output and load it into pymol
without issue. Phyre outputs pdb-format files that you can download and
open just like from the PDB itself. As I recall, it's not intuitively
obvious which link leads you to the .pdb file download from Phyre2, but
loo
Hi,
May be someone else has done this before. I have a predicted PDB file from
Phyre2 (actual PDB isn't available) for this protein I'm studying. Can Pymol
run this prediction PDB file?
Thank you for your help. I appreciate it greatly.
Maze
The materials in t
Alsa,
it looks as if the error does not originate from within the script itself, but
it caused in the chempy module, which reads the sdf files. It looks to me as if
one of your SDF files is either corrupted or PyMol does not like it. Since you
are logging, which file is read, why don’t you load
Hello pyMol Users,
I have recently started working with pyMol. Here is my script, which one of the
users (I am not sure whether it is right or not to write the name) has helped
me to fix:
import os
from pymol import cmd
cmd.reinitialize()
myDir = '/Users/User/myFolder'
#print(myDir)
for filenam
