Re: [PyMOL] (no subject)

2015-04-20 Thread Edward A. Berry
On 04/19/2015 02:08 AM, leila karami wrote: > Dear Marcelo > > Thanks for your quick answer. > > Unfortunately, I can't open the link (https://www.pymol.org/citing) you > suggested me. perhaps your firewall or browser is blocking the https: connection or rejecting the certificate? Try http: in

Re: [PyMOL] Beginning with PyMol

2015-04-20 Thread Rajib/Susmita Bandopadhyay
Dear Prof. Holder, Surprisingly, I had tried the very step you stated but failed to run the program! Our discussion leads me to a conjecture that the Debian PyMol package is perhaps broken. I will do an extensive testing and be back with information. Is there a self-sustaining package in your websi

Re: [PyMOL] Beginning with PyMol

2015-04-20 Thread Thomas Holder
Hi Rajib & Yuktimmana, start like this: 1) click "CH4" 2) on the right side of the window click "Create As New Object" 3) now you can start replacing elements or attaching more fragments. Hope that works. Cheers, Thomas On 19 Apr 2015, at 14:12, Rajib/Susmita Bandopadhyay wrote: > Dear Pr

[PyMOL] creating a virus capsid using supercell.py (Marcelo Marcet)

2015-04-20 Thread Honegger Annemarie
> Hi Everyone, > > I have been trying to build a virus capsid using pymol. The biological unit > for the complete structure is not available. :( > > My first attempt at getting this done was by using the ?rotate? and > ?translate? commands. Unfortunately, these commands can only move objects >