[PyMOL] The problem of save molecule to PDB after mutagenesis wizard

2015-01-26 Thread Biao Ma
Hi, pymol users. I want to change same residues to another one. I try to do it refer to following site, I changed TRY128 to PHE128, http://www.pymolwiki.org/index.php/Mutagenesis But when I save the modified molecular to PDB file, the sequence of residue is out of turn. Who can tell me how to f

Re: [PyMOL] unable to export obj

2015-01-26 Thread Sampson, Jared
Hi Albert - Surface mode 2 outlines the mesh edges with thin cylinders, but if I remember correctly, I think PyMOL’s OBJ export doesn’t do cylinders (or spheres or cones), only triangle meshes. You could try exporting to VRML2 (.wrl) or COLLADA (.dae) format and using something like, e.g. Blen

[PyMOL] Mutagenesis Wizard Help

2015-01-26 Thread Wetherell, Joseph M.
Hello, I am using PyMOL in my senior biochemistry course. I am using a Macbook Pro with the latest version of the OS. I downloaded the educational version of PyMOL, and was able to load a PDB file, 2G47, and manipulate colors and what is seen and what is hidden. However, I attempted to use the