Hi,
I am a new user of pymol. My question is how to add an oxygen atom in
carbonyl group?
Thanks,
Tumpa Sadhukhan.
Ph.D Scholar,
IIT Bombay,
India.
--
Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Serv
Hi Louris -
If your view is centered on the atom from which you would like to draw the
line, and oriented the way you want it, you can achieve something similar to
what it sounds like you want with the following commands.
center myAtom
move x, -4 # `move` works in camera space
pseudoa
Hi Pascal,
these changes are beyond the versioned source tarballs. The SVN
repository is more frequently updated to make new (often experimental)
features available to people who like to test them or need them
urgently. CIF write support was added in this commit:
http://sourceforge.net/p/pymol/cod
Dear Louris,
Probably "axes" script at http://www.pymolwiki.org/index.php/Axes
is a good staring point to study.
Best regards,
Takanori Nakane
On Wed, 19 Nov 2014 12:14:29 + "Feitsma, L.J." wrote:
> Hi all,
>
> I have a small question about transformations with the view matrix in pymol,
I don't think this is possible. Those 9 numbers simply tell you the
orientation. There is much more to it than that. Perspective, camera
position, x-y translation, screen dimensions, for example. Some of these
are in other PyMOL settings.
On Wed, Nov 19, 2014 at 6:14 AM, Feitsma, L.J. wrote:
>
Hi,
Thomas pointed to me that the code for saving cif files is already
in the open source directory.
We need some help here.
The current version is 1.7.2.3.
In Sourceforge it is 1.7.2.2.
We didn't find the option for saving .cif files as indicated by Thomas
in his last reply.
___
we have imp
Hi all,
I have a small question about transformations with the view matrix in pymol,
since I'm not very familiar with the architecture of the matrix.
E.g. I take some coordinates [x1,y1,z1], and using cgo objects, I want to draw
a line/triangle/square to a point distance 4 to the right on the s
