Re: [PyMOL] Access API without the GUI

2014-11-11 Thread Matthew Baumgartner
Hi Doug, Check out these pages on integrating PyMOL into a python script. Essentially you will write a python script that imports pymol. From there you can do things like load objects, align them, or anything else. http://www.pymolwiki.org/index.php/Python_Integration http://www.pymolwiki.org/

Re: [PyMOL] Access API without the GUI

2014-11-11 Thread V.V.
Hi Doug, Please see the batch mode option: http://www.pymolwiki.org/index.php/Command_Line_Options I ran into some issues under Win (http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg12855.html), but it works fine on my Ubuntu. Vitaly On Tue, Nov 11, 2014 at 1:56 PM, Douglas Houst

[PyMOL] Access API without the GUI

2014-11-11 Thread Douglas Houston
Hi all, Does anyone know if there's a way of accessing Pymol's API without the GUI? There are some useful functions in there and my loops would iterate a lot faster if the GUI didn't fire up every time. cheers, Doug _ Dr. Douglas R. Houston