Hi Matt,
looks like a partial build after header changes. Please remove the "build"
directory and rebuild (our setup.py is not tracking header dependancies when
doing incremental builds).
Thanks,
Thomas
On 20 Oct 2014, at 19:10, Matthew Baumgartner wrote:
> Hi,
> I updated pymol to r4098 a
Hi Justin -
I see this same “weirdness" using the https protocol. If you remove the ’s’
from ‘https’ in your URL, however, it will load properly. It must be on a
shared server that has something goofy happening with the handling of https
traffic. I think Jason is still the admin for the wiki
Hi,
I updated pymol to r4098 and now it crashes on launch. I'm assuming that
it was something I did, but I can't figure out what.
Thanks for your help,
Matt
$ pymol
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/pymol/__init__.py", line
71, in
import pym
Markus, I'll create an account for you.
Cheers,
Thomas
On 20 Oct 2014, at 14:33, Markus Heller wrote:
> Would if I could.
>
> How do I sign up for the PyMOLWiki?
>
> THanks
> Markus
>
> -Original Message-
> From: Thomas Holder [mailto:thomas.hol...@schrodinger.com]
> Sent: Thursda
Would if I could.
How do I sign up for the PyMOLWiki?
THanks
Markus
-Original Message-
From: Thomas Holder [mailto:thomas.hol...@schrodinger.com]
Sent: Thursday, October 16, 2014 1:48 PM
To: Markus Heller
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] h_add breaks surface?
Hi Cedric,
I suggest to create an alignment object, then you see which atoms got paired.
http://pymolwiki.org/index.php/Align#Alignment_Objects
Hope that helps.
Cheers,
Thomas
On 20 Oct 2014, at 11:44, Cedric wrote:
> Hi Thomas,
>
> Thank you, I tried that and it is now 1.9A, still seems
Hi Thomas,
Thank you, I tried that and it is now 1.9A, still seems high when the overall
RMSD is 0.38 !
But, that is definitely something I will keep in mind in the future when
calculating the RMSD.
Cedric
> -Original Message-
> From: thomas.hol...@schrodinger.com
> Sent: Mon, 20 Oc
Hi Cedric,
you probably include random waters with "name o". Try adding "... and polymer"
to your selection string.
Cheers,
Thomas
On 20 Oct 2014, at 11:16, Cedric wrote:
> Hi,
>
> I was comparing two very similar structures and I got the following results:
>
> align pdb1, pdb2, cycles=0
Hi,
I was comparing two very similar structures and I got the following results:
align pdb1, pdb2, cycles=0
0.38
align pdb1, pdb2 and name ca, cycles=0
0.05
align pdb1, pdb2 and name ca+cb+c+n, cycles=0
0.07
align pdb1, pdb2 and name ca+cb+c+n+o, cycles=0
9.8
I wonder why the addition of th
On 20/06/14 17:45, Jason Vertrees wrote:
> Hi Suzanne,
>
> Everything should look and act exactly like it has in the past, including the
> address.
>
> Cheers,
>
> -- Jason
>
Hi,
I just saw some weirdness when I try to access
https://www.pymolwiki.org/
That doesn't look like pymol stuff.
C
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