fetch /
hide everything
show cartoon, all
select NlinkedGlyco, resn NAG+BMA+MAN+FUC or byres (polymer within 2.0
of resn NAG+BMA+MAN+FUC)
show sticks, NlinkedGlyco
hide sticks, name C+CO+N
This should do.
Also, are you sure about NDG? If you are talking about N-linked
glycosylation, as far as
Oh, and it should be glucoasn, of course. :-P
On Oct 8, 2014 1:26 AM, "Andreas Warnecke" <4ndreas.warne...@gmail.com>
wrote:
> Hi,
>
> It appears that the following:
> Select gluco, bound_to resn NDG
> Show sticks, gluco
>
> does not work. I'm not sure if the glycosylation is handled as a separate
Hi,
It appears that the following:
Select gluco, bound_to resn NDG
Show sticks, gluco
does not work. I'm not sure if the glycosylation is handled as a separate
residue, but you could try:
select glucoasp, byres (neighbor (resn NDG))
show sticks, glucoasp
FYI: There are pages on selection algebra
D'uh. Thanks for pointing this out.
Follow-up question: I want to show my glycosylated protein as cartoon, with the
glycosides *and* the side chains they're attached to shown in sticks. How do I
do that?
I show the protein as cartoon:
Load foo.pdb
Hide lines
As cartoon
Then I select the gly
Yes, this is possible, but it depends on your pymol version.
Here http://www.pymolwiki.org/index.php/Load_Traj is a description how to do
this.
At first you must load a topology file, and after this you trajectory file,
and both files need to have the same name (eg: "com.top" and "com.cdc").
And
