Hi Hena,
the measurement_color function has been accidentally left out, this will be
fixed in the next Open-Source PyMOL release (it's not broken in Incentive PyMOL
1.7.2.1).
Meanwhile, use the color command on the command line to change measurement
colors, like:
PyMOL> color blue, measure01
Dear Pymol users,
I wish to know how to calculate residue-residue contacts from a PDB file.
Where, contact definition is : two residues are considered to be in contact
if the
minimal distance of their side chain or backbone heavy atoms is < 5.5A ˚ .
Specifically, I want to calculate inter-helical
Ok, ProFit has been passed :D
Now I'm looking for some software which could do the same least-square
fitting for the ensemble of the structures taken it as the separate pdbs
from the work dir (I'm not sure if the mustang software could be useful for
this task)=> because looping using ProFit might
Thanks you very much!
James
2014-09-05 20:18 GMT+02:00 Folmer Fredslund :
> Hi
>
> Small correction to Gianlucas suggestion
>
> ">" will direct the output to a file, overwriting the contents
> ">>" will direct the output to a file, appending the contents
>
> Venlig hilsen
> Folmer Fredslund
> De
Hi,
...a more simplicistic approch to generate side-by-side stereo PNG files
from an animation in PyMOL would be to activate wall-eye stereo in PyMOL
(stereo walleye) and double the x dimension of your graphics windows
(viewport command). Then use the 'Save Movie as... PNG' command (mpng...).
