Hi Jared,
Thanks for your reply. I was aware of the distance command (polar contacts).
The pseudo atom solution could work, but to be honest, I'd prefer a solution
that would detect these interactions.
I've found InteractionDetector.py
(https://github.com/Pymol-Scripts/Pymol-script-repo/blob
Hi Markus -
It’s already possible to highlight polar interactions using the `distance`
command with mode=2. http://www.pymolwiki.org/index.php/Distance
For pi-cation stacking, it might be useful to create pseudo atoms at the
average position of the atoms in each charged group or ring in questi
Hello,
There's a thread in the PyMol Wiki (http://www.pymolwiki.org/index.php/Ideas)
that mentions the possible implementation of functionality to highlight
H-bonds, salt bridges, Pi-stacking, Pi-cations. Has such a thing been
implemented yet, and if not, what's the current status?
Thanks and
