Re: [PyMOL] Pymol wrl output

2014-05-02 Thread Grateful Frog
these are the errors that Shapeways sent back: Unfortunately, the model you recently uploaded TMD11Ultra.wrl did not pass our initial printability checks, so it's not yet ready for 3D printing. Printability Error: - Model failed during repair. This is likely due to problems merging shel

Re: [PyMOL] Pymol wrl output

2014-05-02 Thread Grateful Frog
Hi Marcelo, Thanks for your help and suggestion! I did that and the surface is much nicer. However, the Pymol rendering in VRML still won't load to Shapeways without error. I have to re-render in VRML in MeshLab. My goal is to do it all in Pymol. Any more ideas would be great! Ciao, Bob On

Re: [PyMOL] Pymol wrl output

2014-05-02 Thread Marcelo Marcet
Hi Bob, Before you save your file from pymol try increasing the quality to max, then save as VRML. This increases the number of polygons in the file and after exporting from meshlab the final molecule will look a lot smoother. Cheers, Marcelo On May 2, 2014, at 2:15 PM, Grateful Frog wrote:

[PyMOL] Pymol wrl output

2014-05-02 Thread Grateful Frog
Hi all, I'm new to this list and to this tool. I have encountered a problem with exporting as wrl in pylolk 1.7 that I compiled on my Ubuntu 12.04 platform. I load a PDB file and it displays fine. I then type the command "show surface" and this works fine, too. I then save image as VRML 2, and

Re: [PyMOL] pml for apbs run with pymol

2014-05-02 Thread Thomas Holder
Hi DJ, there is an example in the command help: PyMOL> import psico.electrostatics PyMOL> help apbs_surface Cheers, Thomas On 02 May 2014, at 10:43, Dhananjay wrote: > Hello, > > Thank you for the introducing me to PSICO module. > I can import pisco in my python script. > However, how to

[PyMOL] migration from monitor to wall mounted screen and projector

2014-05-02 Thread Oganesyan, Vaheh
Hi all, I'm planning migration from CRT monitor to wall mounted screen with projector that will support stereo. Mid-range emitter like AE125 for small office (4m by 4m) like mine is sufficient. I'm looking for advise on projector and screen. It looks like ViewSonic PJD7820HD ($699) with native